• blastp 2.2.9 [May-01-2004]

  • Reference:Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs", Nucleic Acids Res. 25:3389-3402.

  • Query:

    AA-01

    Length:

    38

  • Database:

    TREMBL.fasta

    Number of sequences:

    35721

    Total number of letters:

    14571467

    • Sequences producing significant alignments:

    Score (bits):

    E-Value:
    Q8IZ98 Q8IZ98 CUG-BP and ETR-3 like factor 3.

    80.4925

    2.16191e-16
    Q9BTF3 Q9BTF3 Hypothetical protein (Fragment).

    80.4925

    2.16191e-16
    Q9BZC2 Q9BZC2 CUG-BP and ETR-3 like factor 3.

    80.4925

    2.16191e-16
    Q86XB9 Q86XB9 Hypothetical protein.

    68.1662

    1.11032e-12
    Q9BZC1 Q9BZC1 CUG-BP and ETR-3 like factor 4.

    68.1662

    1.11032e-12
    O15414 O15414 CAGH4.

    68.1662

    1.11032e-12
    Q9BQ96 Q9BQ96 Bruno (Drosophila)-like 4, RNA binding protein (Similar t ...

    68.1662

    1.11032e-12
    Q9NR85 Q9NR85 RNA-binding protein BRUNOL4 (Fragment).

    68.1662

    1.11032e-12
    Q8N2M6 Q8N2M6 Hypothetical protein FLJ90115.

    66.6254

    3.23055e-12
    Q86VW6 Q86VW6 BRUNOL5 protein.

    66.2402

    4.21923e-12
    Q9BZC0 Q9BZC0 CUG-BP and ETR-3 like factor 5.

    66.2402

    4.21923e-12
    Q8N6W0 Q8N6W0 Bruno-like 5, RNA binding protein (Drosophila).

    66.2402

    4.21923e-12
    Q9C059 Q9C059 LYST-interacting protein LIP9 (Fragment).

    61.2326

    1.35728e-10
    Q8N607 Q8N607 Bruno-like 6, RNA binding protein (Drosophila).

    58.9214

    6.7361e-10
    Q96J87 Q96J87 BRUNO-like 6 RNA-binding protein (RNA-binding protein CEL ...

    58.9214

    6.7361e-10
    Q92950 Q92950 Apoptosis-related RNA binding protein (ETR-3).

    51.2174

    1.40456e-07
    O95319 O95319 Apoptosis-related RNA binding protein.

    51.2174

    1.40456e-07
    Q8N499 Q8N499 Similar to CUG triplet repeat, RNA binding protein 2.

    51.2174

    1.40456e-07
    Q9UL67 Q9UL67 Neuroblastoma apoptosis-related RNA binding protein (Neur ...

    51.2174

    1.40456e-07
    Q96RQ5 Q96RQ5 Neuroplastoma apoptosis-related RNA-binding protein 3.

    51.2174

    1.40456e-07
    Q96RQ6 Q96RQ6 Neuroplastoma apoptosis-related RNA-binding protein 2.

    51.2174

    1.40456e-07
    Q96NW9 Q96NW9 Neuroblastoma apoptosis-related RNA-binding protein isofo ...

    51.2174

    1.40456e-07
    Q8N438 Q8N438 Hypothetical protein.

    50.447

    2.39582e-07
    O43713 O43713 DJ148E22.2 (Novel PABPC1 (Poly(A)-binding protein, cytopl ...

    30.8018

    0.196446
    Q8TBY0 Q8TBY0 Similar to Apobec-1 complementation factor, APOBEC-1 stim ...

    29.261

    0.571569
    Q96AU2 Q96AU2 Heterogeneous nuclear ribonucleoprotein F.

    28.8758

    0.746493
    Q8IY67 Q8IY67 Hypothetical protein.

    28.1054

    1.27332
    Q15164 Q15164 Human polyadenylate binding protein II (Fragment).

    28.1054

    1.27332
    Q8IYX4 Q8IYX4 Similar to cDNA sequence BC013481.

    27.7202

    1.66301
    Q8TF24 Q8TF24 Hypothetical protein KIAA1978 (Fragment).

    27.7202

    1.66301
    Q9BQ02 Q9BQ02 Similar to nucleolin.

    27.7202

    1.66301
    Q96J71 Q96J71 Hu antigen C long.

    27.7202

    1.66301
    Q8NB06 Q8NB06 Hypothetical protein FLJ34423.

    27.7202

    1.66301
    Q8NEM4 Q8NEM4 Hypothetical protein.

    27.335

    2.17196
    Q96H35 Q96H35 Hypothetical protein.

    26.5646

    3.7048
    Q8IYD4 Q8IYD4 Hypothetical protein.

    25.7942

    6.31944
    Q8NI52 Q8NI52 RNA-binding protein.

    25.7942

    6.31944
    Q96J75 Q96J75 HUD3.

    25.7942

    6.31944
    Q96J74 Q96J74 HUD4.

    25.7942

    6.31944
    Q9NXG3 Q9NXG3 Hypothetical protein FLJ20273.

    25.7942

    6.31944
    Q8IZ69 Q8IZ69 Similar to HpaII tiny fragments locus 9C.

    25.409

    8.25344
    Q96ME6 Q96ME6 Hypothetical protein FLJ32467.

    25.409

    8.25344
    Q9NQU0 Q9NQU0 Testes-specific heterogenous nuclear ribonucleoprotein G- ...

    25.409

    8.25344
    Q96CV3 Q96CV3 Hypothetical protein.

    25.409

    8.25344
    Q9NW13 Q9NW13 Hypothetical protein FLJ10377.

    25.409

    8.25344

    > Q8IZ98 Q8IZ98 CUG-BP and ETR-3 like factor 3.

    Length:

    465

    Score = 80.4925 bits (197),

    Expect = 2.16191e-16,

    Identities = 38/38 (100%),

    Positives = 38/38 (100%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
    Sbjct: 129 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 166


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 45 GLHKGCAFLTYCARDSALKAQSALHEQKTLPG 76



    > Q9BTF3 Q9BTF3 Hypothetical protein (Fragment).

    Length:

    294

    Score = 80.4925 bits (197),

    Expect = 2.16191e-16,

    Identities = 38/38 (100%),

    Positives = 38/38 (100%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
    Sbjct: 123 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 160


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 40 GLHKGCAFLTYCARDSALKAQSALHEQKTLPG 71



    > Q9BZC2 Q9BZC2 CUG-BP and ETR-3 like factor 3.

    Length:

    462

    Score = 80.4925 bits (197),

    Expect = 2.16191e-16,

    Identities = 38/38 (100%),

    Positives = 38/38 (100%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
    Sbjct: 129 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 166


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 45 GLHKGCAFLTYCARDSALKAQSALHEQKTLPG 76



    > Q86XB9 Q86XB9 Hypothetical protein.

    Length:

    448

    Score = 68.1662 bits (165),

    Expect = 1.11032e-12,

    Identities = 30/38 (79%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASS
    Sbjct: 176 GPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 213


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 92 GMHKGCAFLTYCERESALKAQSALHEQKTLPG 123



    > Q9BZC1 Q9BZC1 CUG-BP and ETR-3 like factor 4.

    Length:

    486

    Score = 68.1662 bits (165),

    Expect = 1.11032e-12,

    Identities = 30/38 (79%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASS
    Sbjct: 186 GPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 223


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 92 GMHKGCAFLTYCERESALKAQSALHEQKTLPG 123



    > O15414 O15414 CAGH4.

    Length:

    358

    Score = 68.1662 bits (165),

    Expect = 1.11032e-12,

    Identities = 33/38 (87%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    G +KGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
    Sbjct: 22 GQMAPAKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 59



    > Q9BQ96 Q9BQ96 Bruno (Drosophila)-like 4, RNA binding protein (Similar to etr1).

    Length:

    437

    Score = 68.1662 bits (165),

    Expect = 1.11032e-12,

    Identities = 30/38 (79%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASS
    Sbjct: 138 GPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 175


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 45 GMHKGCAFLTYCERESALKAQSALHEQKTLPG 76



    > Q9NR85 Q9NR85 RNA-binding protein BRUNOL4 (Fragment).

    Length:

    294

    Score = 68.1662 bits (165),

    Expect = 1.11032e-12,

    Identities = 30/38 (79%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG SKGCAFVK+ +HAEAQAAIN LH S+T+PGASS
    Sbjct: 176 GPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 213


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 92 GMHKGCAFLTYCERESALKAQSALHEQKTLPG 123



    > Q8N2M6 Q8N2M6 Hypothetical protein FLJ90115.

    Length:

    484

    Score = 66.6254 bits (161),

    Expect = 3.23055e-12,

    Identities = 29/38 (76%),

    Positives = 33/38 (87%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG SKGCAFVK+ +HAEAQAAIN LH +T+PGASS
    Sbjct: 185 GPDGNSKGCAFVKYSSHAEAQAAINALHGGQTMPGASS 222


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 92 GMHKGCAFLTYCERESALKAQSALHEQKTLPG 123



    > Q86VW6 Q86VW6 BRUNOL5 protein.

    Length:

    402

    Score = 66.2402 bits (160),

    Expect = 4.21923e-12,

    Identities = 29/38 (76%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG+SKGCAFVKF +H EAQAAI+ LH S+T+PGASS
    Sbjct: 168 GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 205


    Score = 31.187 bits (69),

    Expect = 0.150413,

    Identities = 14/32 (44%),

    Positives = 17/32 (53%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A LH +TLPG
    Sbjct: 83 GMHKGCAFLTYCARDSAIKAQTALHEQKTLPG 114



    > Q9BZC0 Q9BZC0 CUG-BP and ETR-3 like factor 5.

    Length:

    481

    Score = 66.2402 bits (160),

    Expect = 4.21923e-12,

    Identities = 29/38 (76%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG+SKGCAFVKF +H EAQAAI+ LH S+T+PGASS
    Sbjct: 168 GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 205


    Score = 31.187 bits (69),

    Expect = 0.150413,

    Identities = 14/32 (44%),

    Positives = 17/32 (53%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A LH +TLPG
    Sbjct: 83 GMHKGCAFLTYCARDSAIKAQTALHEQKTLPG 114



    > Q8N6W0 Q8N6W0 Bruno-like 5, RNA binding protein (Drosophila).

    Length:

    485

    Score = 66.2402 bits (160),

    Expect = 4.21923e-12,

    Identities = 29/38 (76%),

    Positives = 34/38 (89%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG+SKGCAFVKF +H EAQAAI+ LH S+T+PGASS
    Sbjct: 168 GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 205


    Score = 31.187 bits (69),

    Expect = 0.150413,

    Identities = 14/32 (44%),

    Positives = 17/32 (53%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A LH +TLPG
    Sbjct: 83 GMHKGCAFLTYCARDSAIKAQTALHEQKTLPG 114



    > Q9C059 Q9C059 LYST-interacting protein LIP9 (Fragment).

    Length:

    213

    Score = 61.2326 bits (147),

    Expect = 1.35728e-10,

    Identities = 26/38 (68%),

    Positives = 31/38 (82%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG SKGCAFVK+ +HAEA+ N LH S+T+PGASS
    Sbjct: 69 GPDGNSKGCAFVKYSSHAEARPPFNALHGSQTMPGASS 106



    > Q8N607 Q8N607 Bruno-like 6, RNA binding protein (Drosophila).

    Length:

    481

    Score = 58.9214 bits (141),

    Expect = 6.7361e-10,

    Identities = 28/37 (76%),

    Positives = 30/37 (81%),

    Frame = 1 / 1 ,

    Alignment length = 37,

    Query: 2 PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    PDGTSKGCAFVKF + EAQAAI LH SRT+ GASS
    Sbjct: 169 PDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASS 205


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHEQKTLPG 115



    > Q96J87 Q96J87 BRUNO-like 6 RNA-binding protein (RNA-binding protein CELF6).

    Length:

    481

    Score = 58.9214 bits (141),

    Expect = 6.7361e-10,

    Identities = 28/37 (76%),

    Positives = 30/37 (81%),

    Frame = 1 / 1 ,

    Alignment length = 37,

    Query: 2 PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    PDGTSKGCAFVKF + EAQAAI LH SRT+ GASS
    Sbjct: 169 PDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASS 205


    Score = 31.9574 bits (71),

    Expect = 0.0881805,

    Identities = 14/32 (44%),

    Positives = 18/32 (56%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G KGCAF+ + A A + LH +TLPG
    Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHEQKTLPG 115



    > Q92950 Q92950 Apoptosis-related RNA binding protein (ETR-3).

    Length:

    509

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 161 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 198


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 77 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 106



    > O95319 O95319 Apoptosis-related RNA binding protein.

    Length:

    508

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 166 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 203


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 82 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 111



    > Q8N499 Q8N499 Similar to CUG triplet repeat, RNA binding protein 2.

    Length:

    521

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 161 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 198


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 77 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 106



    > Q9UL67 Q9UL67 Neuroblastoma apoptosis-related RNA binding protein (Neuroplastoma apoptosis-related RNA-binding protein 1).

    Length:

    490

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 142 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 179


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 58 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 87



    > Q96RQ5 Q96RQ5 Neuroplastoma apoptosis-related RNA-binding protein 3.

    Length:

    484

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 142 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 179


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 58 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 87



    > Q96RQ6 Q96RQ6 Neuroplastoma apoptosis-related RNA-binding protein 2.

    Length:

    509

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 161 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 198


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 77 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 106



    > Q96NW9 Q96NW9 Neuroblastoma apoptosis-related RNA-binding protein isoform 4.

    Length:

    488

    Score = 51.2174 bits (121),

    Expect = 1.40456e-07,

    Identities = 23/38 (61%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H S+T+ G SS
    Sbjct: 142 GPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 179


    Score = 36.965 bits (84),

    Expect = 0.00274117,

    Identities = 17/30 (57%),

    Positives = 19/30 (63%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ +TLPG
    Sbjct: 58 SKGCCFVTFYTRKAALEAQNALHNIKTLPG 87



    > Q8N438 Q8N438 Hypothetical protein.

    Length:

    514

    Score = 50.447 bits (119),

    Expect = 2.39582e-07,

    Identities = 22/38 (58%),

    Positives = 27/38 (71%),

    Frame = 1 / 1 ,

    Alignment length = 38,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 38
    GPDG S+GCAFV F T A AQ AI +H ++T+ G SS
    Sbjct: 169 GPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 206


    Score = 35.4242 bits (80),

    Expect = 0.00797559,

    Identities = 16/30 (53%),

    Positives = 18/30 (60%),

    Frame = 1 / 1 ,

    Alignment length = 30,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    SKGC FV F T A A N LH+ + LPG
    Sbjct: 85 SKGCCFVTFYTRKAALEAQNALHNMKVLPG 114



    > O43713 O43713 DJ148E22.2 (Novel PABPC1 (Poly(A)-binding protein, cytoplasmic 1) (PABPL1) like protein) (Fragment).

    Length:

    292

    Score = 30.8018 bits (68),

    Expect = 0.196446,

    Identities = 13/23 (57%),

    Positives = 17/23 (74%),

    Frame = 1 / 1 ,

    Alignment length = 23,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLH 28
    S+G FV F+TH AQ AINT++
    Sbjct: 137 SRGFGFVHFETHEAAQQAINTMN 159



    > Q8TBY0 Q8TBY0 Similar to Apobec-1 complementation factor, APOBEC-1 stimulating protein, apobec-1 complementation factor.

    Length:

    533

    Score = 29.261 bits (64),

    Expect = 0.571569,

    Identities = 14/32 (44%),

    Positives = 19/32 (59%),

    Frame = 1 / 1 ,

    Alignment length = 32,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    G ++G AFV + T EAQ AI L++ PG
    Sbjct: 98 GENRGYAFVMYTTKEEAQLAIRILNNYEIRPG 129



    > Q96AU2 Q96AU2 Heterogeneous nuclear ribonucleoprotein F.

    Length:

    415

    Score = 28.8758 bits (63),

    Expect = 0.746493,

    Identities = 14/25 (56%),

    Positives = 17/25 (68%),

    Frame = 1 / 1 ,

    Alignment length = 25,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAIN 25
    GPDG G A V+F TH EA AA++
    Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMS 346



    > Q8IY67 Q8IY67 Hypothetical protein.

    Length:

    606

    Score = 28.1054 bits (61),

    Expect = 1.27332,

    Identities = 13/25 (52%),

    Positives = 15/25 (60%),

    Frame = 1 / 1 ,

    Alignment length = 25,

    Query: 7 KGCAFVKFQTHAEAQAAINTLHSSR 31
    KG AFV +A+AAIN H SR
    Sbjct: 93 KGTAFVTLLNGEQAEAAINAFHQSR 117



    > Q15164 Q15164 Human polyadenylate binding protein II (Fragment).

    Length:

    193

    Score = 28.1054 bits (61),

    Expect = 1.27332,

    Identities = 10/27 (37%),

    Positives = 17/27 (63%),

    Frame = 1 / 1 ,

    Alignment length = 27,

    Query: 2 PDGTSKGCAFVKFQTHAEAQAAINTLH 28
    P+G SKG FV ++ H +A A+ ++
    Sbjct: 37 PNGKSKGFGFVSYEKHEDANKAVEEMN 63



    > Q8IYX4 Q8IYX4 Similar to cDNA sequence BC013481.

    Length:

    353

    Score = 27.7202 bits (60),

    Expect = 1.66301,

    Identities = 12/31 (39%),

    Positives = 19/31 (61%),

    Frame = 1 / 1 ,

    Alignment length = 31,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLP 34
    G ++G A+ ++ + AQAAI TLH+ P
    Sbjct: 95 GLNRGFAYARYSSRRGAQAAIATLHNHPLRP 125



    > Q8TF24 Q8TF24 Hypothetical protein KIAA1978 (Fragment).

    Length:

    384

    Score = 27.7202 bits (60),

    Expect = 1.66301,

    Identities = 14/31 (45%),

    Positives = 16/31 (52%),

    Frame = 1 / 1 ,

    Alignment length = 31,

    Query: 1 GPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 31
    GP G AFV +A+AAIN H SR
    Sbjct: 8 GPPGGRDQPAFVTLLNGEQAEAAINAFHQSR 38



    > Q9BQ02 Q9BQ02 Similar to nucleolin.

    Length:

    482

    Score = 27.7202 bits (60),

    Expect = 1.66301,

    Identities = 10/19 (53%),

    Positives = 16/19 (84%),

    Frame = 1 / 1 ,

    Alignment length = 19,

    Query: 3 DGTSKGCAFVKFQTHAEAQ 21
    DG SKG A+++F+T A+A+
    Sbjct: 197 DGKSKGIAYIEFKTEADAE 215


    Score = 26.1794 bits (56),

    Expect = 4.83863,

    Identities = 10/24 (42%),

    Positives = 18/24 (75%),

    Frame = 1 / 1 ,

    Alignment length = 24,

    Query: 3 DGTSKGCAFVKFQTHAEAQAAINT 26
    +G SKG AF++F + +A+ A+N+
    Sbjct: 291 NGKSKGYAFIEFASFEDAKEALNS 314



    > Q96J71 Q96J71 Hu antigen C long.

    Length:

    318

    Score = 27.7202 bits (60),

    Expect = 1.66301,

    Identities = 12/33 (36%),

    Positives = 18/33 (55%),

    Frame = 1 / 1 ,

    Alignment length = 33,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGA 36
    G S+G F++F EA+ AI L+ + L A
    Sbjct: 114 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 146



    > Q8NB06 Q8NB06 Hypothetical protein FLJ34423.

    Length:

    687

    Score = 27.7202 bits (60),

    Expect = 1.66301,

    Identities = 10/19 (53%),

    Positives = 16/19 (84%),

    Frame = 1 / 1 ,

    Alignment length = 19,

    Query: 3 DGTSKGCAFVKFQTHAEAQ 21
    DG SKG A+++F+T A+A+
    Sbjct: 402 DGKSKGIAYIEFKTEADAE 420


    Score = 26.1794 bits (56),

    Expect = 4.83863,

    Identities = 10/24 (42%),

    Positives = 18/24 (75%),

    Frame = 1 / 1 ,

    Alignment length = 24,

    Query: 3 DGTSKGCAFVKFQTHAEAQAAINT 26
    +G SKG AF++F + +A+ A+N+
    Sbjct: 496 NGKSKGYAFIEFASFEDAKEALNS 519



    > Q8NEM4 Q8NEM4 Hypothetical protein.

    Length:

    346

    Score = 27.335 bits (59),

    Expect = 2.17196,

    Identities = 13/34 (38%),

    Positives = 20/34 (59%),

    Gaps = 1/34 (3%),

    Frame = 1 / 1 ,

    Alignment length = 34,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGAS 37
    G S+G F++F EA+ AI L+ + PGA+
    Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKP-PGAT 195



    > Q96H35 Q96H35 Hypothetical protein.

    Length:

    190

    Score = 26.5646 bits (57),

    Expect = 3.7048,

    Identities = 12/31 (39%),

    Positives = 17/31 (55%),

    Frame = 1 / 1 ,

    Alignment length = 31,

    Query: 3 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTL 33
    +G +G FV F+T EA+ AI L+ L
    Sbjct: 65 EGQPRGYCFVNFETKQEAEQAIQCLNGKLAL 95



    > Q8IYD4 Q8IYD4 Hypothetical protein.

    Length:

    366

    Score = 25.7942 bits (55),

    Expect = 6.31944,

    Identities = 10/28 (36%),

    Positives = 16/28 (57%),

    Frame = 1 / 1 ,

    Alignment length = 28,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSR 31
    G S+G F++F EA+ AI L+ +
    Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQK 197



    > Q8NI52 Q8NI52 RNA-binding protein.

    Length:

    593

    Score = 25.7942 bits (55),

    Expect = 6.31944,

    Identities = 12/33 (36%),

    Positives = 19/33 (58%),

    Frame = 1 / 1 ,

    Alignment length = 33,

    Query: 3 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    DG ++G AFV + EA+ A+ L++ PG
    Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPG 139



    > Q96J75 Q96J75 HUD3.

    Length:

    366

    Score = 25.7942 bits (55),

    Expect = 6.31944,

    Identities = 10/28 (36%),

    Positives = 16/28 (57%),

    Frame = 1 / 1 ,

    Alignment length = 28,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSR 31
    G S+G F++F EA+ AI L+ +
    Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQK 197



    > Q96J74 Q96J74 HUD4.

    Length:

    383

    Score = 25.7942 bits (55),

    Expect = 6.31944,

    Identities = 10/28 (36%),

    Positives = 16/28 (57%),

    Frame = 1 / 1 ,

    Alignment length = 28,

    Query: 4 GTSKGCAFVKFQTHAEAQAAINTLHSSR 31
    G S+G F++F EA+ AI L+ +
    Sbjct: 187 GVSRGVGFIRFDKRIEAEEAIKGLNGQK 214



    > Q9NXG3 Q9NXG3 Hypothetical protein FLJ20273.

    Length:

    524

    Score = 25.7942 bits (55),

    Expect = 6.31944,

    Identities = 12/33 (36%),

    Positives = 19/33 (58%),

    Frame = 1 / 1 ,

    Alignment length = 33,

    Query: 3 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 35
    DG ++G AFV + EA+ A+ L++ PG
    Sbjct: 107 DGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPG 139



    > Q8IZ69 Q8IZ69 Similar to HpaII tiny fragments locus 9C.

    Length:

    613

    Score = 25.409 bits (54),

    Expect = 8.25344,

    Identities = 10/22 (45%),

    Positives = 14/22 (64%),

    Frame = 1 / 1 ,

    Alignment length = 22,

    Query: 9 CAFVKFQTHAEAQAAINTLHSS 30
    CAFV F++ AE A+ LH +
    Sbjct: 99 CAFVTFRSAAERDKALRVLHGA 120



    > Q96ME6 Q96ME6 Hypothetical protein FLJ32467.

    Length:

    562

    Score = 25.409 bits (54),

    Expect = 8.25344,

    Identities = 10/22 (45%),

    Positives = 14/22 (64%),

    Frame = 1 / 1 ,

    Alignment length = 22,

    Query: 9 CAFVKFQTHAEAQAAINTLHSS 30
    CAFV F++ AE A+ LH +
    Sbjct: 111 CAFVTFRSAAERDKALRVLHGA 132



    > Q9NQU0 Q9NQU0 Testes-specific heterogenous nuclear ribonucleoprotein G-T (Fragment).

    Length:

    386

    Score = 25.409 bits (54),

    Expect = 8.25344,

    Identities = 10/23 (43%),

    Positives = 18/23 (78%),

    Frame = 1 / 1 ,

    Alignment length = 23,

    Query: 6 SKGCAFVKFQTHAEAQAAINTLH 28
    S+G AFV F++ A+A+AA+ ++
    Sbjct: 42 SRGFAFVTFESPADAKAAVRDMN 64



    > Q96CV3 Q96CV3 Hypothetical protein.

    Length:

    759

    Score = 25.409 bits (54),

    Expect = 8.25344,

    Identities = 10/19 (53%),

    Positives = 12/19 (63%),

    Frame = 1 / 1 ,

    Alignment length = 19,

    Query: 6 SKGCAFVKFQTHAEAQAAI 24
    SKGCAF +F T AQ +
    Sbjct: 375 SKGCAFAQFMTQEAAQKCL 393



    > Q9NW13 Q9NW13 Hypothetical protein FLJ10377.

    Length:

    759

    Score = 25.409 bits (54),

    Expect = 8.25344,

    Identities = 10/19 (53%),

    Positives = 12/19 (63%),

    Frame = 1 / 1 ,

    Alignment length = 19,

    Query: 6 SKGCAFVKFQTHAEAQAAI 24
    SKGCAF +F T AQ +
    Sbjct: 375 SKGCAFAQFMTQEAAQKCL 393



    Statistics for iteration:

    1

    Database:

    TREMBL.fasta

    Number of sequences:

    35721

    Total number of letters:

    14571467

    Effective search space:

    3.67713e+08

    Effective HSP length:

    12

    Kappa:

    0.041

    Lambda:

    0.267

    Entropy:

    0.14

  • blastp paramters:

    Matrix:

    BLOSUM62

    E-value:

    10

    Gap-open:

    11

    Gap-extend:

    1

    Filter:

    S